PRJNA658001 HISAT2 Samtools Flagstat MultiQC

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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        About MultiQC

        This report was generated using MultiQC, version 1.27

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        PRJNA658001 HISAT2 Samtools Flagstat MultiQC

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-11-16, 00:50 CET based on data in: /data/jwd06/main/091/834/91834135/working/multiqc_WDir

        General Statistics

        Showing 144/144 rows and 1/3 columns.
        Sample NameReadsReads mapped% Reads mapped
        SRR12475103
        39.9M
        38.3M
        96.0%
        SRR12475104
        25.9M
        24.5M
        94.5%
        SRR12475105
        24.3M
        23.3M
        95.8%
        SRR12475106
        28.5M
        27.9M
        97.7%
        SRR12475107
        32.3M
        31.5M
        97.7%
        SRR12475108
        40.3M
        39.1M
        97.0%
        SRR12475109
        47.9M
        46.8M
        97.7%
        SRR12475110
        59.6M
        58.2M
        97.6%
        SRR12475111
        52.6M
        51.1M
        97.0%
        SRR12475112
        80.3M
        78.2M
        97.3%
        SRR12475113
        64.8M
        63.4M
        97.8%
        SRR12475114
        99.4M
        96.7M
        97.3%
        SRR12475115
        59.8M
        58.0M
        97.0%
        SRR12475116
        81.6M
        79.6M
        97.6%
        SRR12475117
        62.1M
        60.7M
        97.7%
        SRR12475118
        59.7M
        58.3M
        97.7%
        SRR12475119
        66.1M
        64.1M
        97.0%
        SRR12475120
        64.4M
        62.9M
        97.7%
        SRR12475121
        59.2M
        57.8M
        97.6%
        SRR12475122
        66.8M
        65.1M
        97.5%
        SRR12475123
        43.9M
        42.7M
        97.5%
        SRR12475124
        10.6M
        9.7M
        91.0%
        SRR12475125
        35.4M
        34.6M
        97.7%
        SRR12475126
        41.5M
        40.5M
        97.7%
        SRR12475127
        14.3M
        13.5M
        94.3%
        SRR12475128
        43.9M
        42.9M
        97.8%
        SRR12475129
        78.6M
        76.6M
        97.5%
        SRR12475130
        48.0M
        46.9M
        97.5%
        SRR12475131
        62.2M
        60.6M
        97.4%
        SRR12475132
        71.3M
        69.5M
        97.5%
        SRR12475133
        68.6M
        67.0M
        97.6%
        SRR12475134
        63.5M
        61.5M
        96.9%
        SRR12475135
        59.7M
        58.3M
        97.7%
        SRR12475136
        63.6M
        62.1M
        97.6%
        SRR12475137
        57.6M
        56.2M
        97.6%
        SRR12475138
        69.9M
        68.2M
        97.6%
        SRR12475139
        47.4M
        46.3M
        97.5%
        SRR12475140
        48.9M
        47.6M
        97.5%
        SRR12475141
        25.1M
        23.8M
        94.8%
        SRR12475142
        16.2M
        15.8M
        97.6%
        SRR12475143
        28.3M
        27.5M
        97.3%
        SRR12475144
        49.2M
        48.2M
        97.9%
        SRR12475145
        17.3M
        16.8M
        97.0%
        SRR12475146
        19.7M
        19.1M
        97.1%
        SRR12475147
        48.2M
        47.1M
        97.7%
        SRR12475148
        40.1M
        39.2M
        97.7%
        SRR12475149
        60.5M
        59.1M
        97.7%
        SRR12475150
        50.9M
        49.7M
        97.7%
        SRR12475151
        33.0M
        31.8M
        96.5%
        SRR12475152
        28.8M
        27.7M
        96.2%
        SRR12475153
        15.0M
        13.8M
        92.5%
        SRR12475154
        26.1M
        24.8M
        95.2%
        SRR12475155
        9.1M
        8.2M
        90.5%
        SRR12475156
        16.1M
        15.2M
        94.1%
        SRR12475157
        9.6M
        8.8M
        91.9%
        SRR12475158
        27.1M
        25.8M
        95.2%
        SRR12475159
        41.6M
        40.1M
        96.5%
        SRR12475160
        37.0M
        35.6M
        96.2%
        SRR12475161
        48.7M
        47.0M
        96.5%
        SRR12475162
        41.3M
        39.7M
        96.2%
        SRR12475163
        38.5M
        37.3M
        96.9%
        SRR12475164
        32.9M
        31.8M
        96.8%
        SRR12475165
        60.5M
        58.3M
        96.4%
        SRR12475166
        54.8M
        53.2M
        97.1%
        SRR12475167
        50.5M
        48.8M
        96.7%
        SRR12475168
        43.5M
        41.9M
        96.4%
        SRR12475169
        39.7M
        38.4M
        96.8%
        SRR12475170
        45.3M
        43.6M
        96.2%
        SRR12475171
        41.1M
        39.7M
        96.6%
        SRR12475172
        21.3M
        20.2M
        95.0%
        SRR12475173
        38.5M
        37.1M
        96.4%
        SRR12475174
        34.3M
        32.5M
        94.6%
        SRR12475175
        37.3M
        36.1M
        96.7%
        SRR12475176
        37.4M
        35.7M
        95.5%
        SRR12475177
        41.2M
        40.1M
        97.2%
        SRR12475178
        40.6M
        39.3M
        96.8%
        SRR12475179
        46.2M
        44.9M
        97.3%
        SRR12475180
        36.8M
        35.3M
        96.1%
        SRR12475181
        52.3M
        51.0M
        97.6%
        SRR12475182
        41.4M
        40.1M
        96.8%
        SRR12475183
        35.6M
        34.2M
        96.1%
        SRR12475184
        71.8M
        70.0M
        97.5%
        SRR12475185
        68.6M
        66.7M
        97.3%
        SRR12475186
        63.0M
        61.2M
        97.3%
        SRR12475187
        57.6M
        55.8M
        97.0%
        SRR12475188
        62.9M
        61.3M
        97.4%
        SRR12475189
        41.2M
        39.7M
        96.5%
        SRR12475190
        43.7M
        42.5M
        97.1%
        SRR12475191
        37.6M
        35.4M
        94.2%
        SRR12475192
        26.3M
        25.6M
        97.2%
        SRR12475193
        42.3M
        41.2M
        97.5%
        SRR12475194
        31.4M
        30.5M
        97.4%
        SRR12475195
        41.5M
        40.1M
        96.7%
        SRR12475196
        50.0M
        48.3M
        96.6%
        SRR12475197
        50.8M
        49.5M
        97.3%
        SRR12475198
        34.4M
        33.5M
        97.2%
        SRR12475199
        37.6M
        36.4M
        97.0%
        SRR12475200
        49.6M
        48.3M
        97.4%
        SRR12475201
        73.5M
        71.7M
        97.5%
        SRR12475202
        33.8M
        32.9M
        97.4%
        SRR12475203
        48.1M
        46.4M
        96.6%
        SRR12475204
        31.4M
        30.5M
        97.1%
        SRR12475205
        35.7M
        34.7M
        97.2%
        SRR12475206
        48.8M
        47.5M
        97.3%
        SRR12475207
        39.8M
        38.8M
        97.4%
        SRR12475208
        43.7M
        42.6M
        97.5%
        SRR12475209
        40.2M
        39.1M
        97.2%
        SRR12475210
        35.2M
        34.0M
        96.6%
        SRR12475211
        30.5M
        29.7M
        97.4%
        SRR12475212
        43.1M
        42.1M
        97.6%
        SRR12475213
        29.0M
        28.2M
        97.1%
        SRR12475214
        31.8M
        30.6M
        96.2%
        SRR12475215
        46.2M
        44.8M
        96.9%
        SRR12475216
        33.0M
        32.2M
        97.4%
        SRR12475217
        38.2M
        37.2M
        97.4%
        SRR12475218
        33.7M
        32.9M
        97.6%
        SRR12475219
        53.0M
        51.5M
        97.2%
        SRR12475220
        51.8M
        50.4M
        97.3%
        SRR12475221
        60.4M
        58.8M
        97.4%
        SRR12475222
        51.8M
        50.4M
        97.4%
        SRR12475223
        37.1M
        35.6M
        95.9%
        SRR12475224
        34.7M
        33.4M
        96.2%
        SRR12475225
        28.3M
        26.9M
        95.2%
        SRR12475226
        25.0M
        23.8M
        95.0%
        SRR12475227
        26.4M
        25.2M
        95.4%
        SRR12475228
        21.2M
        20.0M
        94.7%
        SRR12475229
        34.0M
        32.1M
        94.4%
        SRR12475230
        29.6M
        28.2M
        95.3%
        SRR12475231
        44.5M
        43.0M
        96.4%
        SRR12475232
        38.4M
        37.0M
        96.4%
        SRR12475233
        44.6M
        42.8M
        95.9%
        SRR12475234
        39.1M
        37.4M
        95.7%
        SRR12475235
        29.9M
        28.9M
        96.4%
        SRR12475236
        22.8M
        21.8M
        95.8%
        SRR12475237
        47.6M
        45.4M
        95.5%
        SRR12475238
        48.0M
        46.0M
        95.9%
        SRR12475239
        42.0M
        40.0M
        95.2%
        SRR12475240
        38.8M
        37.3M
        95.9%
        SRR12475241
        37.7M
        36.1M
        96.0%
        SRR12475242
        38.4M
        36.8M
        95.8%
        SRR12475243
        36.6M
        35.0M
        95.6%
        SRR12475244
        27.0M
        25.7M
        95.1%
        SRR12475245
        37.7M
        36.3M
        96.1%
        SRR12475246
        33.1M
        31.8M
        96.2%

        Samtools

        Toolkit for interacting with BAM/CRAM files.URL: http://www.htslib.orgDOI: 10.1093/bioinformatics/btp352

        Flagstat

        This module parses the output from samtools flagstat

        Created with MultiQC